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data analysis spatial transcriptomic experiment  (10X Genomics)

 
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    10X Genomics data analysis spatial transcriptomic experiment
    Data Analysis Spatial Transcriptomic Experiment, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/spatial+transcriptomic+data/pm42226209-88-10-38
    Average 86 stars, based on 1 article reviews
    data analysis spatial transcriptomic experiment - by Bioz Stars, 2026-09
    86/100 stars

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    Related Articles

    Sequencing:

    Article Title: Spatial single-cell landscape of tumor-associated macrophages and their crosstalk with the tumor microenvironment.
    Article Snippet: .. To minimize batch effects caused by differences in sequencing platforms and methodologies, all single-cell and spatial transcriptomic data were obtained exclusively from the 10x Genomics and 10x Visium platforms. ..

    Single Cell:

    Article Title: Spatial single-cell landscape of tumor-associated macrophages and their crosstalk with the tumor microenvironment.
    Article Snippet: .. To minimize batch effects caused by differences in sequencing platforms and methodologies, all single-cell and spatial transcriptomic data were obtained exclusively from the 10x Genomics and 10x Visium platforms. ..

    Article Title: The Role of Tumor Necrosis Factor Signaling in Atherosclerosis and Stroke
    Article Snippet: .. To characterise TNF signaling within atherosclerotic plaques, we analysed two publicly available datasets: (i) an integrated single-cell RNA-sequencing (scRNA-seq) atlas of 259,116 cells from human carotid, coronary, and femoral plaques (73 donors), and (ii) Xenium (10x Genomics) spatial transcriptomic data comprising 120,164 cells from carotid endarterectomy specimens with pathologist-annotated subregions (12 donors). ..

    other:

    Article Title: Abstracts of the 6th SFCNS Congress—Swiss Federation of Clinical Neuro-Societies Lausanne, Switzerland, 29–31 October 2025—United for Brain Health
    Article Snippet: Methods Spatial transcriptomic data from 10XGenomics of eight histopathologically confirmed GG samples were analyzed using SPATA2.

    RNA sequencing:

    Article Title: The Role of Tumor Necrosis Factor Signaling in Atherosclerosis and Stroke
    Article Snippet: .. To characterise TNF signaling within atherosclerotic plaques, we analysed two publicly available datasets: (i) an integrated single-cell RNA-sequencing (scRNA-seq) atlas of 259,116 cells from human carotid, coronary, and femoral plaques (73 donors), and (ii) Xenium (10x Genomics) spatial transcriptomic data comprising 120,164 cells from carotid endarterectomy specimens with pathologist-annotated subregions (12 donors). ..



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    Single-nucleus transcriptome and spatial <t>transcriptomics</t> landscape of the ileal tissue of SAP and CON group rats. (A) Schematic illustration of the workflow for this study. (B) Representative Hematoxylin and Eosin (H&E)–stained ileal sections from CON and SAP rats. (C) UMAP plot of single-nucleus transcriptome profiles of SAP and CON group samples. Colors indicate groups, clusters and cell types. (D) Heatmap plot of marker genes for cell annotation. (E) Bar plot showing cell-type proportions (mean ± SEM) in snRNA-seq data. (F) Spatial transcriptomics profiles of SAP and CON group samples. Colors indicate cell types. (G) Bar plot showing cell-type proportions (mean ± SEM) in spatial transcriptomics (Stereo-seq) data. Statistical significance: ns, not significant; *P < 0.05; **P < 0.01; ***P < 0.001; ****P < 0.0001.
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    Image Search Results


    Single-nucleus transcriptome and spatial transcriptomics landscape of the ileal tissue of SAP and CON group rats. (A) Schematic illustration of the workflow for this study. (B) Representative Hematoxylin and Eosin (H&E)–stained ileal sections from CON and SAP rats. (C) UMAP plot of single-nucleus transcriptome profiles of SAP and CON group samples. Colors indicate groups, clusters and cell types. (D) Heatmap plot of marker genes for cell annotation. (E) Bar plot showing cell-type proportions (mean ± SEM) in snRNA-seq data. (F) Spatial transcriptomics profiles of SAP and CON group samples. Colors indicate cell types. (G) Bar plot showing cell-type proportions (mean ± SEM) in spatial transcriptomics (Stereo-seq) data. Statistical significance: ns, not significant; *P < 0.05; **P < 0.01; ***P < 0.001; ****P < 0.0001.

    Journal: Frontiers in Immunology

    Article Title: Single-nucleus and spatial transcriptomics reveal intestinal cellular heterogeneity, differentiation, and cell communication mechanisms in SAP-induced intestinal injury

    doi: 10.3389/fimmu.2026.1719902

    Figure Lengend Snippet: Single-nucleus transcriptome and spatial transcriptomics landscape of the ileal tissue of SAP and CON group rats. (A) Schematic illustration of the workflow for this study. (B) Representative Hematoxylin and Eosin (H&E)–stained ileal sections from CON and SAP rats. (C) UMAP plot of single-nucleus transcriptome profiles of SAP and CON group samples. Colors indicate groups, clusters and cell types. (D) Heatmap plot of marker genes for cell annotation. (E) Bar plot showing cell-type proportions (mean ± SEM) in snRNA-seq data. (F) Spatial transcriptomics profiles of SAP and CON group samples. Colors indicate cell types. (G) Bar plot showing cell-type proportions (mean ± SEM) in spatial transcriptomics (Stereo-seq) data. Statistical significance: ns, not significant; *P < 0.05; **P < 0.01; ***P < 0.001; ****P < 0.0001.

    Article Snippet: The spatial transcriptomics data were obtained according to the protocol of STOmics Gene Expression Set-S1 on the website ( https://www.stomics.tech/ ), which is an improved version of initial procedures.

    Techniques: Spatial Transcriptomics, Staining, Marker